Services: proteins and proteomes

Name of service Tag Related links* Key Collection
SWICZ

Database of protein expression time series for specific experiments on streptomyces, caulobacter, neiseria.

SWISS-MODEL Repository

SWISS-MODEL Repository is a continuously updated database of annotated protein structure homology models generated by the fully automated SWISS-MODEL modelling pipeline. 

CDD
SWISS-MODEL Server

SWISS-MODEL is a fully automated service for protein structure homology modelling. It provides a personal web based workspace for interactive modelling, storing project data and visualizing results online. 

SwissBioPics

SwissBioPics is a freely available library of interactive biological images for visualizing subcellular location data. It includes cell types from all kingdoms of life - from muscle, neuronal and epithelial cells of animals to rods, cocci, clubs, spirals, and other more exotic forms of bacteria and archaea.

SwissDrugDesign

SwissDrugDesign provides a collection of web-based tools covering all aspects of computer-aided drug design.

Tabloid Proteome

Database of protein association networks representing a broad scala of biological associations between pairs of proteins that go beyond  direct protein interactions

TCRex

Web tool for the prediction of T-cell receptor epitope recognition.

The B6 database

Contains tools for the functional classification of PLP-dependent enzymes in predicted protein sequences.

TOPP

The OpenMS Proteomics Pipeline making a range of tools available, including MetaProSIP and TOPPview. 

TOPPView

Visualising own data through OpenMS tools, including spectra, chromatograms, 2D LC-MS data and annotations. 

TRAVeLer

Template-based RNA secondary structure visualization.

Unicarb-DB

The glycomic MS database and repository.

Unilectin

UniLectin is a platform integrating information regarding non-enzymatic carbohydrate-binding proteins usually referred to as lectins with the prospect of building and refining a structural and functional classification of these proteins. It includes the reference Lectin3D a database of 3D structures curated from the PDB. Interactive resource for the exploration of lectins

Unipept

Platform for metaproteomics data analysis with a focus on interactive data visualizations

UniProtKB

UniProt produces and maintains automatic and manually curated annotation of all publicly available protein sequences and serves these to users through various interfaces. 

CDD
ValidatorDB

Collection of validation results for the entire Protein Data Bank.

VEuPathDB

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) parasitic species (EuPathDB), fungi (FungiDB) and vector species (VectorBase)

ViralZone

A resource for viral genes and families, providing detailed molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives easy access to UniProtKB/Swiss-Prot viral protein entries.