%1 services

Apple is one of the most famous fruits globally and occupies a central position in folklore, culture, and art. Apple cultivars have retained high genetic and phenotypic diversity, evidenced by the high number of apple varieties cultivated today. The economic and cultural importance of apple has driven efforts to catalogue and exploit this genetic diversity, but few of these data are currently integrated into ELIXIR resources. We propose a data implementation study to integrate the high quality apple reference genome and its associated catalogue of genetic diversity, representing the most widely cultivated apple varieties around the world. We will use apple as a case study for managing the growing number of ‘multi-genome’ fruit projects, testing and where necessary, improving tools to streamline data import and exchange between ELIXIR supported resources, specifically BioSamples, ENA, EVA, ORCAE and Ensembl Plants.

Apple is one of the most famous fruits globally and occupies a central position in folklore, culture, and art. Apple cultivars have retained high genetic and phenotypic diversity, evidenced by the high number of apple varieties cultivated today. The economic and cultural importance of apple has driven efforts to catalogue and exploit this genetic diversity, but few of these data are currently integrated into ELIXIR resources. We propose a data implementation study to integrate the high quality apple reference genome and its associated catalogue of genetic diversity, representing the most widely cultivated apple varieties around the world. We will use apple as a case study for managing the growing number of ‘multi-genome’ fruit projects, testing and where necessary, improving tools to streamline data import and exchange between ELIXIR supported resources, specifically BioSamples, ENA, EVA, ORCAE and Ensembl Plants.

Apple is one of the most famous fruits globally and occupies a central position in folklore, culture, and art. Apple cultivars have retained high genetic and phenotypic diversity, evidenced by the high number of apple varieties cultivated today. The economic and cultural importance of apple has driven efforts to catalogue and exploit this genetic diversity, but few of these data are currently integrated into ELIXIR resources. We propose a data implementation study to integrate the high quality apple reference genome and its associated catalogue of genetic diversity, representing the most widely cultivated apple varieties around the world. We will use apple as a case study for managing the growing number of ‘multi-genome’ fruit projects, testing and where necessary, improving tools to streamline data import and exchange between ELIXIR supported resources, specifically BioSamples, ENA, EVA, ORCAE and Ensembl Plants.

The ELIXIR Plant Sciences Community has been implementing a distributed infrastructure for FAIR plant genotype-phenotype data publication and access, which aims to support agronomic research and industrial development.

This infrastructure is based on a central search service, FAIDARE, which sits atop a federation of distributed data repositories across several ELIXIR Nodes, all of which implement a common web service specification, the Breeding API (BrAPI, https://brapi.org/). BrAPI ensures accessibility, and also interoperability and reusability because it implements the MIAPPE metadata standard (https://www.miappe.org/), whereas FAIDARE ensures findability.

While the need for data FAIRness and the solutions of the ELIXIR Plant Sciences Community to enable it have been gaining traction in academia, their penetration in the industry has been almost null. Our goal is that industry stakeholders not only make use of the publicly available data in ELIXIR’s infrastructure, but also can deposit their (meta)data in that infrastructure or even implement their own BrAPI endpoints. Realizing this goal requires outreach activities, to divulge ELIXIR’s plant data infrastructure and FAIR-enabling standards, and training activities on how to use the infrastructure and standards.

The Navigator Company a leading force in the international pulp and paper market and one of Portugal's strongest brands on the world stage. Its production structure is based on three major industrial sites in Cacia, Figueira da Foz and Setúbal, where the facilities set international standards for the pulp and paper industry. In addition to its industrial activities, it carries out, mostly through RAIZ Forest and Paper Institute, extensive research on Eucalyptus breeding and genetics, generating genotypic and phenotypic data on over 300,000 specimens across a range of sites and covering up to 4 generations of pedigree. This wealth of data makes The Navigator Company a prime candidate for a pilot knowledge-transfer project to enable it to draw value from and contribute to ELIXIR’s plant data infrastructure.

The goals of this project are (1) to transfer knowledge on standards for FAIR plant data access and publication (particularly BrAPI) from the ELIXIR Plant Sciences Community to the Navigator Company; (2) to collaborate with The Navigator Company in organizing its data on eucalyptus breeding according to the MIAPPE and BrAPI standards; and (3) to establish an access protocol for the Navigator Company to submit its datasets to the ELIXIR-PT BrAPI end-point in bulk.

The accomplishment of these goals will lead to the expansion of the plant datasets provided by the ELIXIR-PT BrAPI end-point to the Plant Sciences community, and more importantly, will bring a key industrial partner into the fold of FAIR plant data publication. Furthermore, due to the prominent role of The Navigator Company in Europe, we expect this project to play a key outreach role and pave the way to further collaborations with other partners in the industry.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

ELIXIR is about integration of diverse resources including tools, training materials and technical services. Within EXCELERATE, ELIXIR is building portals to collate information on tools and data services (bio.tools), training events and material (TeSS, WP11 e-learning environment), compute resources (WP4 technical service registry) and cross-linked policy, standards and databases (FAIRsharing, WP4). A focus of EXCELERATE is to set up these portals such that they can interoperate.

Currently, a scientist can use TeSS to find training events and materials and then, in a separate search, use bio.tools to find relevant tools, and FAIRsharing to find standards and databases. At the moment these ELIXIR portals provide a useful, but fragmented service.  Ideally, linking TeSS and bio.tools to ELIXIR’s computer resources via common workflow diagrams would enable end-users to discover and learn about the prevalent bioinformatics workflows. In this implementation study, we want to achieve the first step and link TeSS and bio.tools via most prevalent bioinformatics workflows and lay the foundation to later incorporate other ELIXIR platforms, such as the compute resources, to provide an even more useful service for the researcher.

The goal of this implementation study is to provide the life-scientist end-user with a powerful tool to find and use ELIXIR resources - across the spectrum - based on intuitive graphical diagrams of the most prevalent scientific workflows.

Over the past four years, the ELIXIR Plant Sciences Community has been making large strides towards enabling FAIR plant phenotyping data: the ELIXIR plant data search service FAIDARE (https://urgi.versailles.inra.fr/faidare/) addresses findability by integrating the various BrAPI (https://brapi.org) end-points of ELIXIR Nodes, which address accessibility and ensure compliance with the MIAPPE metadata standard (https://www.miappe.org/) and therefore interoperability.

Combined, these resources represent a fully FAIR-compliant data management framework. However, there is one final critical hurdle impeding its broad adoption by plant scientists: there is no standardized user-friendly way to submit a dataset to a BrAPI end-point (or more precisely the database underlying it).

The goal of this project is to develop a web interface for MIAPPE-compliant data submission that can be deployed by any plant phenotyping database.

This interface will be modular, including an interactive web form for metadata entry mirroring the organization of MIAPPE, web services for key functionalities such as ontology lookup and validation of MIAPPE compliance, and modules for database entry that upload the data to a database. For the latter, we will develop a module that makes use of BrAPI PUT calls to upload data directly through a BrAPI endpoint, but also a module for uploading the data through FAIRDOM’s SEEK platform, which is already being deployed by some partners.

The project is expected to substantially benefit the sustainability and increase the adoption of the data management framework put together by the ELIXIR Plant Sciences Community, which includes key ELIXIR services such as FAIDARE. Furthermore, the project will both build capacity and increase collaboration between ELIXIR Nodes on data management, and enhance interactions between Node experts contributing to the Plant Sciences Community.

Over the past four years, the ELIXIR Plant Sciences Community has been making large strides towards enabling FAIR plant phenotyping data: the ELIXIR plant data search service FAIDARE (https://urgi.versailles.inra.fr/faidare/) addresses findability by integrating the various BrAPI (https://brapi.org) end-points of ELIXIR Nodes, which address accessibility and ensure compliance with the MIAPPE metadata standard (https://www.miappe.org/) and therefore interoperability.

Combined, these resources represent a fully FAIR-compliant data management framework. However, there is one final critical hurdle impeding its broad adoption by plant scientists: there is no standardized user-friendly way to submit a dataset to a BrAPI end-point (or more precisely the database underlying it).

The goal of this project is to develop a web interface for MIAPPE-compliant data submission that can be deployed by any plant phenotyping database.

This interface will be modular, including an interactive web form for metadata entry mirroring the organization of MIAPPE, web services for key functionalities such as ontology lookup and validation of MIAPPE compliance, and modules for database entry that upload the data to a database. For the latter, we will develop a module that makes use of BrAPI PUT calls to upload data directly through a BrAPI endpoint, but also a module for uploading the data through FAIRDOM’s SEEK platform, which is already being deployed by some partners.

The project is expected to substantially benefit the sustainability and increase the adoption of the data management framework put together by the ELIXIR Plant Sciences Community, which includes key ELIXIR services such as FAIDARE. Furthermore, the project will both build capacity and increase collaboration between ELIXIR Nodes on data management, and enhance interactions between Node experts contributing to the Plant Sciences Community.

Over the past four years, the ELIXIR Plant Sciences Community has been making large strides towards enabling FAIR plant phenotyping data: the ELIXIR plant data search service FAIDARE (https://urgi.versailles.inra.fr/faidare/) addresses findability by integrating the various BrAPI (https://brapi.org) end-points of ELIXIR Nodes, which address accessibility and ensure compliance with the MIAPPE metadata standard (https://www.miappe.org/) and therefore interoperability.

Combined, these resources represent a fully FAIR-compliant data management framework. However, there is one final critical hurdle impeding its broad adoption by plant scientists: there is no standardized user-friendly way to submit a dataset to a BrAPI end-point (or more precisely the database underlying it).

The goal of this project is to develop a web interface for MIAPPE-compliant data submission that can be deployed by any plant phenotyping database.

This interface will be modular, including an interactive web form for metadata entry mirroring the organization of MIAPPE, web services for key functionalities such as ontology lookup and validation of MIAPPE compliance, and modules for database entry that upload the data to a database. For the latter, we will develop a module that makes use of BrAPI PUT calls to upload data directly through a BrAPI endpoint, but also a module for uploading the data through FAIRDOM’s SEEK platform, which is already being deployed by some partners.

The project is expected to substantially benefit the sustainability and increase the adoption of the data management framework put together by the ELIXIR Plant Sciences Community, which includes key ELIXIR services such as FAIDARE. Furthermore, the project will both build capacity and increase collaboration between ELIXIR Nodes on data management, and enhance interactions between Node experts contributing to the Plant Sciences Community.

Over the past four years, the ELIXIR Plant Sciences Community has been making large strides towards enabling FAIR plant phenotyping data: the ELIXIR plant data search service FAIDARE (https://urgi.versailles.inra.fr/faidare/) addresses findability by integrating the various BrAPI (https://brapi.org) end-points of ELIXIR Nodes, which address accessibility and ensure compliance with the MIAPPE metadata standard (https://www.miappe.org/) and therefore interoperability.

Combined, these resources represent a fully FAIR-compliant data management framework. However, there is one final critical hurdle impeding its broad adoption by plant scientists: there is no standardized user-friendly way to submit a dataset to a BrAPI end-point (or more precisely the database underlying it).

The goal of this project is to develop a web interface for MIAPPE-compliant data submission that can be deployed by any plant phenotyping database.

This interface will be modular, including an interactive web form for metadata entry mirroring the organization of MIAPPE, web services for key functionalities such as ontology lookup and validation of MIAPPE compliance, and modules for database entry that upload the data to a database. For the latter, we will develop a module that makes use of BrAPI PUT calls to upload data directly through a BrAPI endpoint, but also a module for uploading the data through FAIRDOM’s SEEK platform, which is already being deployed by some partners.

The project is expected to substantially benefit the sustainability and increase the adoption of the data management framework put together by the ELIXIR Plant Sciences Community, which includes key ELIXIR services such as FAIDARE. Furthermore, the project will both build capacity and increase collaboration between ELIXIR Nodes on data management, and enhance interactions between Node experts contributing to the Plant Sciences Community.

Recent progress in sequencing technologies has produced several large scale genotyping data sets for crops. The insights afforded by this data have been published in high profile scientific articles, but the underlying raw genotype data and the associated sample and population metadata have not been routinely submitted to appropriate archives.

The aim of this implementation study, led by the ELIXIR Plant Community and in coordination with the ELIXIR Interoperability Platform and Data Platform, is to provide this wealth of data according to FAIR principles. It will ensure an interoperable link with the phenotypic data that is stored in distributed institutional repositories which is crucial for excelerated crop breeding.

We propose to create a sustainable toolbox to submit data to the ELIXIR Deposition Database “European Variation Archive” (EVA) and enrich the data with interoperable metadata regarding plant data standards like “Multi-Crop Passport Descriptor” (MCPD) and “Minimum Information About a Plant Phenotyping Experiment” (MIAPPE).

Recent progress in sequencing technologies has produced several large scale genotyping data sets for crops. The insights afforded by this data have been published in high profile scientific articles, but the underlying raw genotype data and the associated sample and population metadata have not been routinely submitted to appropriate archives.

The aim of this implementation study, led by the ELIXIR Plant Community and in coordination with the ELIXIR Interoperability Platform and Data Platform, is to provide this wealth of data according to FAIR principles. It will ensure an interoperable link with the phenotypic data that is stored in distributed institutional repositories which is crucial for excelerated crop breeding.

We propose to create a sustainable toolbox to submit data to the ELIXIR Deposition Database “European Variation Archive” (EVA) and enrich the data with interoperable metadata regarding plant data standards like “Multi-Crop Passport Descriptor” (MCPD) and “Minimum Information About a Plant Phenotyping Experiment” (MIAPPE).

Recent progress in sequencing technologies has produced several large scale genotyping data sets for crops. The insights afforded by this data have been published in high profile scientific articles, but the underlying raw genotype data and the associated sample and population metadata have not been routinely submitted to appropriate archives.

The aim of this implementation study, led by the ELIXIR Plant Community and in coordination with the ELIXIR Interoperability Platform and Data Platform, is to provide this wealth of data according to FAIR principles. It will ensure an interoperable link with the phenotypic data that is stored in distributed institutional repositories which is crucial for excelerated crop breeding.

We propose to create a sustainable toolbox to submit data to the ELIXIR Deposition Database “European Variation Archive” (EVA) and enrich the data with interoperable metadata regarding plant data standards like “Multi-Crop Passport Descriptor” (MCPD) and “Minimum Information About a Plant Phenotyping Experiment” (MIAPPE).

Recent progress in sequencing technologies has produced several large scale genotyping data sets for crops. The insights afforded by this data have been published in high profile scientific articles, but the underlying raw genotype data and the associated sample and population metadata have not been routinely submitted to appropriate archives.

The aim of this implementation study, led by the ELIXIR Plant Community and in coordination with the ELIXIR Interoperability Platform and Data Platform, is to provide this wealth of data according to FAIR principles. It will ensure an interoperable link with the phenotypic data that is stored in distributed institutional repositories which is crucial for excelerated crop breeding.

We propose to create a sustainable toolbox to submit data to the ELIXIR Deposition Database “European Variation Archive” (EVA) and enrich the data with interoperable metadata regarding plant data standards like “Multi-Crop Passport Descriptor” (MCPD) and “Minimum Information About a Plant Phenotyping Experiment” (MIAPPE).

Recent progress in sequencing technologies has produced several large scale genotyping data sets for crops. The insights afforded by this data have been published in high profile scientific articles, but the underlying raw genotype data and the associated sample and population metadata have not been routinely submitted to appropriate archives.

The aim of this implementation study, led by the ELIXIR Plant Community and in coordination with the ELIXIR Interoperability Platform and Data Platform, is to provide this wealth of data according to FAIR principles. It will ensure an interoperable link with the phenotypic data that is stored in distributed institutional repositories which is crucial for excelerated crop breeding.

We propose to create a sustainable toolbox to submit data to the ELIXIR Deposition Database “European Variation Archive” (EVA) and enrich the data with interoperable metadata regarding plant data standards like “Multi-Crop Passport Descriptor” (MCPD) and “Minimum Information About a Plant Phenotyping Experiment” (MIAPPE).

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.

The Plant community has already implemented some critical elements of its roadmap, but needs
some funding to coordinate the next steps.

The first point is about disseminating ELIXIR results through reusable training material and service bundles. The target audience will be biologists, agronomists and bioinformaticians involved in data production and analysis.

The second point is about improving data findability. We propose to specify a European one-stop
portal giving access to plant data and tools in collaboration with the data platform. It will leverage
existing ELIXIR resources: aggregation databases dedicated to plants (FAIDARE, Ensembl Plant,
InterMine) and tools and standards collections (FAIRsharing, bio.tools).

Last, the gathering and formatting of data and metadata increasingly relies on community driven
toolboxes such as FAIRDOM/Seek, COPO and ISA-Tools. There is an opportunity to improve their interoperability through aligned validation profiles and API use, hence easing submission to ELIXIR Databases.