%1 services

Name Description ELIXIR Node
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Improving IDP tools interoperability and integration into ELIXIR

The increasingly well-documented role of intrinsic disorder in protein behavior and function requires infrastructure improvements to enable enhanced researcher access to related tools and data. In this study we implement:

i) improved accessibility for tools that define where disorder is likely to appear in proteins,

ii) better integration of disorder with CAFA, including protein region definitions, so improving the connection between function and disorder,

iii) exploration of emerging disorder definitions and data for future prediction challenges,

iv) a gap analysis study to connect to tools and data from the 3D-Bioinfo and proteomics communities.

In addition, the study includes the Galaxy community and the interoperability, data, tools and training platforms, with participants from 8 countries.

ELIXIR Italy, ELIXIR Belgium , ELIXIR Hungary, ELIXIR Spain, ELIXIR Greece, ELIXIR Germany, ELIXIR Cyprus
Integration and standardization of intrinsically disordered protein data (2018-IDPs)

Intrinsically disordered proteins (IDPs), characterized by high conformational variability, cover almost a third of the residues in Eukaryotic proteomes. As major players in cellular regulation, IDPs are involved in numerous diseases.

Specialized IDP databases provide a starting point for analysis, yet their integration into core databases remains very limited. Here, we propose to start integrating IDP information into ELIXIR Core Data Resources.

This will be achieved with a three pronged approach:

  1. Integration of an expanded version of MobiDB-lite into UniProtKB and PDBe including links back to MobiDB via the InterPro infrastructure.
  2. Creation of a minimal information about IDP experiments (MIADE) standard and data interchange format will help ensure interoperability between databases with manually curated IDP data.
  3. Sustainability of curated IDP data will be enhanced by creating PubDisProt, a new deposition resource for linking curated literature and protein identifiers across databases.
ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Integration and standardization of intrinsically disordered protein data (2018-IDPs)

Intrinsically disordered proteins (IDPs), characterized by high conformational variability, cover almost a third of the residues in Eukaryotic proteomes. As major players in cellular regulation, IDPs are involved in numerous diseases.

Specialized IDP databases provide a starting point for analysis, yet their integration into core databases remains very limited. Here, we propose to start integrating IDP information into ELIXIR Core Data Resources.

This will be achieved with a three pronged approach:

  1. Integration of an expanded version of MobiDB-lite into UniProtKB and PDBe including links back to MobiDB via the InterPro infrastructure.
  2. Creation of a minimal information about IDP experiments (MIADE) standard and data interchange format will help ensure interoperability between databases with manually curated IDP data.
  3. Sustainability of curated IDP data will be enhanced by creating PubDisProt, a new deposition resource for linking curated literature and protein identifiers across databases.
ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Integration and standardization of intrinsically disordered protein data (2018-IDPs)

Intrinsically disordered proteins (IDPs), characterized by high conformational variability, cover almost a third of the residues in Eukaryotic proteomes. As major players in cellular regulation, IDPs are involved in numerous diseases.

Specialized IDP databases provide a starting point for analysis, yet their integration into core databases remains very limited. Here, we propose to start integrating IDP information into ELIXIR Core Data Resources.

This will be achieved with a three pronged approach:

  1. Integration of an expanded version of MobiDB-lite into UniProtKB and PDBe including links back to MobiDB via the InterPro infrastructure.
  2. Creation of a minimal information about IDP experiments (MIADE) standard and data interchange format will help ensure interoperability between databases with manually curated IDP data.
  3. Sustainability of curated IDP data will be enhanced by creating PubDisProt, a new deposition resource for linking curated literature and protein identifiers across databases.
ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Integration and standardization of intrinsically disordered protein data (2018-IDPs)

Intrinsically disordered proteins (IDPs), characterized by high conformational variability, cover almost a third of the residues in Eukaryotic proteomes. As major players in cellular regulation, IDPs are involved in numerous diseases.

Specialized IDP databases provide a starting point for analysis, yet their integration into core databases remains very limited. Here, we propose to start integrating IDP information into ELIXIR Core Data Resources.

This will be achieved with a three pronged approach:

  1. Integration of an expanded version of MobiDB-lite into UniProtKB and PDBe including links back to MobiDB via the InterPro infrastructure.
  2. Creation of a minimal information about IDP experiments (MIADE) standard and data interchange format will help ensure interoperability between databases with manually curated IDP data.
  3. Sustainability of curated IDP data will be enhanced by creating PubDisProt, a new deposition resource for linking curated literature and protein identifiers across databases.
ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Integration and standardization of intrinsically disordered protein data (2018-IDPs)

Intrinsically disordered proteins (IDPs), characterized by high conformational variability, cover almost a third of the residues in Eukaryotic proteomes. As major players in cellular regulation, IDPs are involved in numerous diseases.

Specialized IDP databases provide a starting point for analysis, yet their integration into core databases remains very limited. Here, we propose to start integrating IDP information into ELIXIR Core Data Resources.

This will be achieved with a three pronged approach:

  1. Integration of an expanded version of MobiDB-lite into UniProtKB and PDBe including links back to MobiDB via the InterPro infrastructure.
  2. Creation of a minimal information about IDP experiments (MIADE) standard and data interchange format will help ensure interoperability between databases with manually curated IDP data.
  3. Sustainability of curated IDP data will be enhanced by creating PubDisProt, a new deposition resource for linking curated literature and protein identifiers across databases.
ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland
Standardizing Intrinsically Disordered Proteins (IDPs) data

The ELIXIR IDP community white paper (https://doi.org/10.12688/f1000research.20136.1) presented a roadmap for e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of tools and resources to support the characterisation of IDPs. The proposed implementation study will focus on two identified priority areas for the IDP community: the development of formats for standardised data transfer and the creation of a central hub for data dissemination. These advances will simplify access to the output of IDP research and facilitate the integration of IDP data into the ELIXIR Core Data Resources.

As part of this Implementation Study the IDP Community is organising a workshop, taking place on January 26th, 2022, 14:00-18:00 CET. 

The agenda, including connection details can be found here

ELIXIR Italy, ELIXIR Hungary, ELIXIR Belgium , ELIXIR Greece, ELIXIR Czech Republic, EMBL-EBI, ELIXIR Cyprus, ELIXIR Spain, ELIXIR Switzerland